| Protein ZmMTERF30 | |
|---|---|
|
ZmMTERF30 is a protein in the mTERF family.
|
|
| Information | |
| TF Name: | ZmMTERF30 |
| Species: | Maize |
| TF Family: | mTERF |
| Gene Name(Synonym): | MTERF30 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 2 |
Protein ZmMTERF30
ZmMTERF30 is a protein in the mTERF family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d047442 | DAPseq |  |
sequence | fimo | position |
| Zm00001d047442 | DAPseq |  |
sequence | fimo | position |
| Zm00001d047442 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d047442 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmMTERF30 is the regulator
Interactions where ZmMTERF30 is the target
Expand
Zm00001d047442_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MSGTRTALAHEGLDYGPRLVAPRRSRLSVVAVAVRTRPASLAVPGLPPPTPEPVLPSPPVAAGVAAVLLEAGVPPADLRR
AAGMCPELLSVPAEAVAAALRFLTEEAGVPEAELQRVLRRRPRLLVCPVAARLRPTLYFLRALGVPDLHRRADLLSFSVE
DKLLPRIEFLESLGLPARAARSMARRFPALFGYGVDGNMRPKAEYLLGVGAMGRRADELYEFPEYFSYALAARIVPRHEA
CAASGVAMPLPAMLRPGEAKFRATLDSCVGSTLPRRRSALWHATWVDDDATAAKETMV
MSGTRTALAHEGLDYGPRLVAPRRSRLSVVAVAVRTRPASLAVPGLPPPTPEPVLPSPPVAAGVAAVLLEAGVPPADLRR
AAGMCPELLSVPAEAVAAALRFLTEEAGVPEAELQRVLRRRPRLLVCPVAARLRPTLYFLRALGVPDLHRRADLLSFSVE
DKLLPRIEFLESLGLPARAARSMARRFPALFGYGVDGNMRPKAEYLLGVGAMGRRADELYEFPEYFSYALAARIVPRHEA
CAASGVAMPLPAMLRPGEAKFRATLDSCVGSTLPRRRSALWHATWVDDDATAAKETMV
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
Nucleotide Sequence
Copy to clipboard
Expand
ATGTCTGGCACCCGCACCGCCCTGG...
ATGTCTGGCACCCGCACCGCCCTGGCGCACGAGGGCTTGGATTATGGTCCCAGGCTGGTGGCGCCGCGCCGCAGCAGGCTAAGCGTCGTCGCCGTTGCGGTGCGGACCAGGCCGGCCAGCCTCGCAGTCCCGGGCCTCCCGCCCCCGACGCCGGAGCCCGTGCTGCCGTCGCCGCCCGTGGCCGCAGGCGTCGCGGCGGTGCTGCTCGAGGCGGGCGTGCCGCCCGCGGACCTCCGGCGCGCGGCGGGGATGTGCCCGGAGCTGCTGTCCGTGCCCGCGGAGGCCGTCGCGGCCGCGCTCCGGTTCCTGACGGAGGAGGCGGGCGTCCCGGAGGCGGAGCTCCAGCGCGTGCTCCGGCGGCGCCCGCGCCTGCTCGTGTGCCCCGTGGCGGCGCGGCTGCGGCCCACGCTCTACTTCCTGCGCGCGCTCGGCGTGCCCGACCTGCACCGCCGCGCCGACCTGCTGTCCTTCTCCGTGGAGGACAAGCTGCTGCCGCGGATCGAGTTCCTCGAGTCGCTAGGCCTGCCCGCGCGCGCCGCTCGCTCCATGGCGCGCCGCTTCCCCGCGCTCTTCGGCTACGGCGTGGACGGGAACATGCGGCCCAAGGCGGAGTACCTCCTGGGCGTGGGCGCCATGGGCCGCCGCGCCGACGAGCTGTACGAGTTCCCCGAGTACTTCTCCTACGCGCTGGCCGCGCGCATCGTGCCGCGCCACGAGGCGTGCGCCGCGAGCGGGGTCGCGATGCCGCTGCCCGCCATGCTCCGCCCCGGGGAGGCCAAGTTTCGCGCCACGCTCGATAGCTGCGTCGGGTCCACGCTGCCCCGGAGGCGGTCGGCGCTGTGGCACGCCACGTGGGTGGACGACGACGCGACGGCGGCGAAGGAGACGATGGTGTGA
GRMZM2G157716_T01 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MVTMSGTRTALAHEGLDYGPRLVAPRRSRLSVVAVAVRTRPASLAVPGLPPPTPEPVLPSPPVAAGVAAVLLEAGVPPAD
LRRAAGMCPELLSVPAEAVAAALRFLTEEAGVPEAELQRVLRRRPRLLVCPVAARLRPTLYFLRALGVPDLHRRADLLSF
SVEDKLLPRIEFLESLGLPARAARSMARRFPALFGYGVDGNMRPKAEYLLGVGAMGRRADELYEFPEYFSYALAARIVPR
HEACAASGVAMPLPAMLRPGEAKFRATLDSCVGSTLPRRRSALWHATWVDDDATAAKETMVNGGINSCLAILGCAYIAMQ
LVALVEERKLEAYDRIHRQKLIIEEKLNLEHVRMDKQKENEDKEEEDMILSMDLNKFNMLLREYTK
Nucleotide Sequence
Copy to clipboard
Expand
ATGGTGACTATGTCTGGCACCCGCA...
ATGGTGACTATGTCTGGCACCCGCACCGCCCTGGCGCACGAGGGCTTGGATTATGGTCCCAGGCTGGTGGCGCCGCGCCGCAGCAGGCTAAGCGTCGTCGCCGTTGCGGTGCGGACCAGGCCGGCCAGCCTCGCAGTCCCGGGCCTCCCGCCCCCGACGCCGGAGCCCGTGCTGCCGTCGCCGCCCGTGGCCGCAGGCGTCGCGGCGGTGCTGCTCGAGGCGGGCGTGCCGCCCGCGGACCTCCGGCGCGCGGCGGGGATGTGCCCGGAGCTGCTGTCCGTGCCCGCGGAGGCCGTCGCGGCCGCGCTCCGGTTCCTGACGGAGGAGGCGGGCGTCCCGGAGGCGGAGCTCCAGCGCGTGCTCCGGCGGCGCCCGCGCCTGCTCGTGTGCCCCGTGGCGGCGCGGCTGCGGCCCACGCTCTACTTCCTGCGCGCGCTCGGCGTGCCCGACCTGCACCGCCGCGCCGACCTGCTGTCCTTCTCCGTGGAGGACAAGCTGCTGCCGCGGATCGAGTTCCTCGAGTCGCTAGGCCTGCCCGCGCGCGCCGCTCGCTCCATGGCGCGCCGCTTCCCCGCGCTCTTCGGCTACGGCGTGGACGGGAACATGCGGCCCAAGGCGGAGTACCTCCTGGGCGTGGGCGCCATGGGCCGCCGCGCCGACGAGCTGTACGAGTTCCCCGAGTACTTCTCCTACGCGCTGGCCGCGCGCATCGTGCCGCGCCACGAGGCGTGCGCCGCGAGCGGGGTCGCGATGCCGCTGCCCGCCATGCTCCGCCCCGGGGAGGCCAAGTTTCGCGCCACGCTCGATAGCTGCGTCGGGTCCACGCTGCCCCGGAGGCGGTCGGCGCTGTGGCACGCCACGTGGGTGGACGACGACGCGACGGCGGCGAAGGAGACGATGGTGAACGGAGGCATTAATTCTTGCTTGGCTATACTTGGTTGTGCTTATATAGCCATGCAGTTAGTTGCTTTGGTAGAAGAAAGAAAGTTGGAGGCATATGACAGAATTCACAGACAAAAGCTCATCATAGAGGAGAAGTTGAATCTGGAGCATGTGAGGATGGACAAGCAGAAAGAAAATGAGGACAAGGAGGAAGAGGATATGATCCTAAGCATGGATCTGAACAAATTCAACATGTTGCTTCGGGAGTACACCAAGTGA
GRMZM2G157716_T02 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MVTMSGTRTALAHEGLDYGPRLVAPRRSRLSVVAVAVRTRPASLAVPGLPPPTPEPVLPSPPVAAGVAAVLLEAGVPPAD
LRRAAGMCPELLSVPAEAVAAALRFLTEEAGVPEAELQRVLRRRPRLLVCPVAARLRPTLYFLRALGVPDLHRRADLLSF
SVEDKLLPRIEFLESLGLPARAARSMARRFPALFGYGVDGNMRPKAEYLLGVGAMGRRADELYEFPEYFSYALAARIVPR
HEACAASGVAMPLPAMLRPGEAKFRATLDSCVGSTLPRRRSALWHATWVDDDATAAKETMV
Nucleotide Sequence
Copy to clipboard
Expand
ATTCACATACAAAGAGATAGAGAAA...
ATTCACATACAAAGAGATAGAGAAAAAAGAGAAAAGCTTGCGAGCGATGGTGACTATGTCTGGCACCCGCACCGCCCTGGCGCACGAGGGCTTGGATTATGGTCCCAGGCTGGTGGCGCCGCGCCGCAGCAGGCTAAGCGTCGTCGCCGTTGCGGTGCGGACCAGGCCGGCCAGCCTCGCAGTCCCGGGCCTCCCGCCCCCGACGCCGGAGCCCGTGCTGCCGTCGCCGCCCGTGGCCGCAGGCGTCGCGGCGGTGCTGCTCGAGGCGGGCGTGCCGCCCGCGGACCTCCGGCGCGCGGCGGGGATGTGCCCGGAGCTGCTGTCCGTGCCCGCGGAGGCCGTCGCGGCCGCGCTCCGGTTCCTGACGGAGGAGGCGGGCGTCCCGGAGGCGGAGCTCCAGCGCGTGCTCCGGCGGCGCCCGCGCCTGCTCGTGTGCCCCGTGGCGGCGCGGCTGCGGCCCACGCTCTACTTCCTGCGCGCGCTCGGCGTGCCCGACCTGCACCGCCGCGCCGACCTGCTGTCCTTCTCCGTGGAGGACAAGCTGCTGCCGCGGATCGAGTTCCTCGAGTCGCTAGGCCTGCCCGCGCGCGCCGCTCGCTCCATGGCGCGCCGCTTCCCCGCGCTCTTCGGCTACGGCGTGGACGGGAACATGCGGCCCAAGGCGGAGTACCTCCTGGGCGTGGGCGCCATGGGCCGCCGCGCCGACGAGCTGTACGAGTTCCCCGAGTACTTCTCCTACGCGCTGGCCGCGCGCATCGTGCCGCGCCACGAGGCGTGCGCCGCGAGCGGGGTCGCGATGCCGCTGCCCGCCATGCTCCGCCCCGGGGAGGCCAAGTTTCGCGCCACGCTCGATAGCTGCGTCGGGTCCACGCTGCCCCGGAGGCGGTCGGCGCTGTGGCACGCCACGTGGGTGGACGACGACGCGACGGCGGCGAAGGAGACGATGGTGTGACGTGCGCATTATATTGGTAGGCTGGTAGCGTATATGCGTATGTCCATATGGCATTGGCTGCTTGTAAGTATGAGAGCCATGATGAATCTGGTTGCGTGCTTCTTCCATCAGGTGAACGGAGGCATTAA
Copyright © 2023 Grassius.org | Last updated: 2023-06-26